fokirapid.blogg.se - Clc sequence viewer statistics

#Clc sequence viewer statistics software#
#Clc sequence viewer statistics torrent#

Comprehensive NGS software pipeline for assembly, alignment, variant calling and analysis of NGS data.Has own database- “knowledge base” based on COSMIC, OMIM, and TCGA databases.(QIAGEN) allows for variant identification and analysis, uses NCI-60 data set for cancer, Supported third part informatin: Entrez Gene, RefSeq, ClinVar gives contextual details of results instead of just A to B relationship.Private cloud repository - formerly a redistributor of SRA and other NCBI resources command-line or via web, can fetch data from a URL, build custom pipeline/ workflow has site: data downloads come directly from NCBI.

#Clc sequence viewer statistics torrent#

De novo assembly: “In addition to Sanger sequence data, reads from these high-throughput sequencing machines are supported The 454 FLX System and the 454 GS Junior System from Roche, Illumina Genome Analyzer, Illumina HiSeq, Illumina HiScan, and Illumina MiSeq sequencing systems, SOLiD system from Life Technologies, Ion Torrent system from Life Technologies”.Read mapping: “In addition to Sanger sequence data, reads from these high-throughput sequencing machines are supported: The 454 FLX System and the 454 GS Junior System from Roche, Illumina Genome Analyzer, Illumina HiSeq, Illumina HiScan, and Illumina MiSeq sequencing systems, SOLiD system from Life Technologies, Ion Torrent system from Life Technologies, Helicos from Helicos BioSciences”.Also accepts: FASTA, GFF/GTF/GVF, BED, Wiggle, Cosmic, UCSC variant database, complete genomics master var file.

Accepts VCF files from 1000 Genomes Project.

Features include: resequencing, workflow, read mapping, de novo assembly, variant detection, RNA-Seq, ChIP-Seq, Genome Browser, etc (entire list on website) Main Workbench offers database search (Genbank, Blast, Pubmed) 2000 organizations have invested in CLC

DNA-Seq Feature, can annotate with dbSNP.

Alignment feature: Supports alignment from Illumina, Ion Torrent, 454 (Roche), and Pac Bio.

In addition, prealigned data in SAM, BAM or Illumina-specific ELAND format can be directly imported for analysis.” Supports workflows “one can import the sample data in FASTA, FASTQ or tag-count format.

offers many different tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizations, Biological Interpretation, etc.